WebThese are the top rated real world Python examples of goatoolsobo_parser.GODag.get extracted from open source projects. You can rate examples to help us improve the quality of examples. ... wr_subobo.py Project: tanghaibao/goatools. class WrSubObo(object): """Read a large GO-DAG from an obo file. Write a subset GO-DAG into a small obo file ... WebDec 27, 2024 · The text was updated successfully, but these errors were encountered:
Move reldepth calculations to its own module #188 - github.com
WebTo help you get started, we’ve selected a few goatools examples, based on popular ways it is used in public projects. Secure your code as it's written. Use Snyk Code to scan source code in minutes - no build needed - and fix issues immediately. Enable here. tanghaibao / goatools / tests / test_goea_statsmodels.py View on Github. WebJul 4, 2024 · Printing records in go-basic.obo like: reader = OBOReader() for rec in reader: print(rec) gives: TypeError: unsupported format string passed to NoneType.__format__ Python isn't happy formatting... serverreadyaction vscode
GOATOOLS: A Python library for Gene Ontology analyses
WebOct 26, 2024 · from goatools import obo_parser: from collections import defaultdict: import scanpy as sc: import numpy as np: import pandas as pd: import torch: def prepare_GO_data (adata, gene2go, GO_file, GO_min_genes = 500, GO_max_genes = None, GO_min_level = 3, GO_max_level = 3): """ Preprocesses data . GO terms are propagated to all parents … WebTo help you get started, we’ve selected a few goatools examples, based on popular ways it is used in public projects. Secure your code as it's written. Use Snyk Code to scan … WebMay 11, 2016 · Thank you for using GOATOOLs and thank you for bringing this to our attention. The issue seems to be the GOTerm class's str function. It was expecting an integer, even if the level and depth GOTerm attributes were not yet assigned. the tekumel journal no1 ebay